Infer transcription-factor activity with decoupleR — activity_tf • bulkMAE

Infer transcription-factor activity with decoupleR

Usage

activity_tf(
  x,
  experiment,
  assay,
  organism = "human",
  resource = c("collectri", "dorothea"),
  min_size = 5,
  ...
)

Arguments

x: A MultiAssayExperiment object.
experiment: Optional experiment name.
assay: Assay name or one-based assay index.
organism: Organism accepted by the selected network resource.
resource: TF network: current CollecTRI or DoRothEA.
min_size: Minimum regulon size passed to decoupleR::run_ulm().
...: Additional arguments passed to decoupleR::run_ulm().

Value

The native decoupleR result table.