Supports an SVA result containing sv, an RUV matrix result containing W,
an RUVSeq SeqExpressionSet with W_ phenotype columns, or an already
sample-by-covariate matrix/data frame. Sample names are never inferred from
row positions.
Usage
adjust_covariates(result, columns =NULL)
Arguments
result
An adjustment result or sample-by-covariate object.
columns
Optional unique column names or indices to retain.
Value
A finite numeric data frame with unique sample row names.