Estimate unwanted factors with RUVg
Usage
adjust_ruv(x, experiment, controls, k = 1, assay = "counts", ...)
Arguments
- x
A MultiAssayExperiment object.
- experiment
Optional experiment name.
- controls
Control-feature names or indices passed as cIdx.
- k
Number of unwanted factors.
- assay
Assay name or one-based assay index.
- ...
Additional arguments passed to RUVSeq::RUVg().
Value
The native object returned by RUVSeq::RUVg().