Estimate surrogate variables with sva — adjust_sva • bulkMAE

Estimate surrogate variables with sva

Usage

adjust_sva(
  x,
  experiment,
  assay,
  full,
  null = ~1,
  n_surrogates = NULL,
  method = "irw",
  ...
)

Arguments

x: A MultiAssayExperiment object.
experiment: Optional experiment name.
assay: Assay name or one-based assay index.
full: Full biological model formula.
null: Null model formula.
n_surrogates: Optional number of surrogate variables. When omitted, sva::num.sv() is used.
method: Method passed to sva::sva().
...: Additional arguments passed to sva::sva().

Value

A native sva result list.