Extract DESeq2 results — de_deseq2_results • bulkMAE

Extract DESeq2 results

Usage

de_deseq2_results(
  fit,
  contrast = NULL,
  name = NULL,
  alpha = 0.05,
  independent_filtering = TRUE,
  ...
)

Arguments

fit: A fitted DESeqDataSet, usually from de_deseq2().
contrast: Optional DESeq2 contrast.
name: Optional coefficient name. Do not supply together with contrast.
alpha: Independent-filtering false discovery rate threshold.
independent_filtering: Use DESeq2 independent filtering.
...: Additional arguments passed to DESeq2::results().

Value

A native DESeqResults object.