CIBERSORTx is an external service or container rather than an R backend.
This helper prepares its required gene-by-sample table without uploading or
writing data.
Usage
deconv_cibersortx_input(
x,
experiment,
assay = "tpm",
gene_column = "GeneSymbol"
)
Arguments
- x
A MultiAssayExperiment object.
- experiment
Optional experiment name.
- assay
Assay name or one-based assay index.
- gene_column
Name of the first identifier column.
Value
A data frame ready to write as a tab-delimited mixture file.