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Prepare an up/down query for LINCS or CMap

Source: R/clinical.R
drug_query.Rd

Prepare an up/down query for LINCS or CMap

Usage

drug_query(statistics, n = 150)

Arguments

statistics

Named numeric differential-expression statistics.

n

Maximum number of genes selected separately from the positive and negative statistics.

Value

A list with upset and downset gene identifiers.

Examples

statistic <- c(gene1 = 3, gene2 = 2, gene3 = -1, gene4 = -4)
drug_query(statistic, n = 2)
#> $upset
#> [1] "gene1" "gene2"
#> 
#> $downset
#> [1] "gene4" "gene3"
#>