Run Gene Ontology enrichment

Usage

enrich_go(
  genes = NULL,
  ranks = NULL,
  method = c("ora", "gsea"),
  org_db,
  key_type = "ENTREZID",
  ontology = "BP",
  universe = NULL,
  ...
)

Arguments

genes: Gene identifiers of interest. Required only for method = "ora".
ranks: Named numeric gene-level statistics. Required only for method = "gsea".
method: Enrichment method: over-representation analysis (ora) or preranked GSEA (gsea).
org_db: An installed organism annotation database.
key_type: Identifier type used in genes or ranks.
ontology: GO ontology: BP, MF, CC, or ALL.
universe: Optional background gene universe for ORA.
...: Additional arguments passed to clusterProfiler::enrichGO() or clusterProfiler::gseGO().

Value

A native enrichResult or gseaResult object.