Run KEGG enrichment

Run KEGG enrichment

Usage

enrich_kegg(
  genes = NULL,
  ranks = NULL,
  method = c("ora", "gsea"),
  organism = "hsa",
  key_type = "kegg",
  universe = NULL,
  ...
)

Arguments

genes

Gene identifiers of interest. Required only for method = "ora".

ranks

Named numeric gene-level statistics. Required only for method = "gsea".

method

Enrichment method: over-representation analysis (ora) or preranked GSEA (gsea).

organism

KEGG organism code, for example hsa or mmu.

key_type

Identifier type accepted by the clusterProfiler backend.

universe

Optional background gene universe for ORA.

...

Additional arguments passed to clusterProfiler::enrichKEGG() or clusterProfiler::gseKEGG().

Value

A native enrichResult or gseaResult object.