Run Reactome enrichment

Run Reactome enrichment

Usage

enrich_reactome(
  genes = NULL,
  ranks = NULL,
  method = c("ora", "gsea"),
  organism = "human",
  universe = NULL,
  ...
)

Arguments

genes

Entrez gene identifiers of interest. Required only for method = "ora".

ranks

Named numeric Entrez-level statistics. Required only for method = "gsea".

method

Enrichment method: over-representation analysis (ora) or preranked GSEA (gsea).

organism

Organism accepted by ReactomePA::enrichPathway().

universe

Optional background gene universe for ORA.

...

Additional arguments passed to ReactomePA::enrichPathway() or ReactomePA::gsePathway().

Value

A native enrichResult or gseaResult object.