Retrieve MSigDB gene sets through msigdbr — gene_sets_msigdb • bulkMAE

Retrieve MSigDB gene sets through msigdbr

Usage

gene_sets_msigdb(
  species = "human",
  collection = "H",
  subcollection = NULL,
  id_type = c("gene_symbol", "ncbi_gene", "ensembl_gene"),
  db_species = "HS",
  ...
)

Arguments

species: Target species accepted by msigdbr::msigdbr().
collection: MSigDB collection code.
subcollection: Optional MSigDB subcollection code.
id_type: Identifier column returned in each set.
db_species: MSigDB source database species.
...: Additional arguments passed to msigdbr::msigdbr().

Value

A named gene-set list with MSigDB source, version, species, collection, subcollection, and identifier metadata stored as attributes.