The returned object is an experiment leaf, not a stateful analysis object.
Add it to a MultiAssayExperiment with mae_create().
Usage
import_tximport(
files,
col_data,
type = "salmon",
tx2gene = NULL,
counts_from_abundance = "no",
...
)Arguments
- files
Named character vector of quantification files.
- col_data
Sample metadata; row names must equal
names(files).- type
Quantifier type accepted by
tximport::tximport().- tx2gene
Optional transcript-to-gene mapping.
- counts_from_abundance
Value passed to
countsFromAbundance.- ...
Additional arguments passed to
tximport::tximport().