Estimate DESeq2 size factors
Usage
normalize_deseq(x, experiment, assay = "counts", type = "ratio", ...)
Arguments
- x
A MultiAssayExperiment object.
- experiment
Optional experiment name.
- assay
Assay name or one-based assay index.
- type
Size-factor estimator passed to DESeq2::estimateSizeFactors().
- ...
Additional arguments passed to DESeq2::estimateSizeFactors().
Value
A native DESeqDataSet with estimated size factors.