Calculate TMM normalization factors — normalize_tmm • bulkMAE

Calculate TMM normalization factors

Usage

normalize_tmm(x, experiment, assay = "counts", method = "TMM", ...)

Arguments

x: A MultiAssayExperiment object.
experiment: Optional experiment name.
assay: Assay name or one-based assay index.
method: Normalization method passed to edgeR::normLibSizes().
...: Additional arguments passed to edgeR::normLibSizes().

Value

A native edgeR::DGEList containing normalization factors.