Calculate sample-to-sample correlations — qc_correlation • bulkMAE

Calculate sample-to-sample correlations

Usage

qc_correlation(
  x,
  experiment,
  assay,
  method = "pearson",
  use = "pairwise.complete.obs",
  features = NULL
)

Arguments

x: A MultiAssayExperiment object.
experiment: Optional experiment name.
assay: Assay name or one-based assay index.
method: Correlation method passed to stats::cor().
use: Missing-value policy passed to stats::cor().
features: Optional feature subset.

Value

A sample-by-sample correlation matrix.