Uses the current parameter-object API: GSVA::gsvaParam() followed by
GSVA::gsva().
Usage
score_gsva(
x,
experiment,
gene_sets,
assay,
kcdf = "auto",
min_size = 1,
max_size = Inf,
verbose = FALSE,
...
)
Arguments
- x
A MultiAssayExperiment object.
- experiment
Optional experiment name.
- gene_sets
Named list of gene sets.
- assay
Assay name or one-based assay index.
- kcdf
Kernel used by GSVA.
- min_size, max_size
Gene-set size limits.
- verbose
Show backend progress.
- ...
Additional arguments passed to GSVA::gsvaParam().
Value
The native matrix-like object returned by GSVA::gsva().