Score a gene-expression signature

Usage

score_signature(
  x,
  experiment,
  weights,
  assay,
  center = FALSE,
  scale = FALSE,
  na_rm = FALSE
)

x: A MultiAssayExperiment object.
experiment: Optional experiment name.
weights: Named numeric feature weights, or an unweighted character vector of feature names.
assay: Assay name or one-based assay index.
center, scale: Either a logical value, or a named numeric vector of training-set feature centers/scales. TRUE estimates values from the current cohort and is therefore unsuitable for locked external validation; supply frozen training values instead.
na_rm: Remove missing values when summing scores.

A named numeric vector with one score per sample.