Score samples with rank-based singscore — score_singscore • bulkMAE

Score samples with rank-based singscore

Usage

score_singscore(
  x,
  experiment,
  up_set,
  down_set = NULL,
  assay,
  ties_method = "min",
  known_direction = TRUE,
  ...
)

Arguments

x: A MultiAssayExperiment object.
experiment: Optional experiment name.
up_set: Features expected to be up-regulated.
down_set: Optional features expected to be down-regulated.
assay: Assay name or one-based assay index.
ties_method: Ranking method passed to singscore::rankGenes().
known_direction: Whether signature direction is known.
...: Additional arguments passed to singscore::simpleScore().

Value

The native data frame returned by singscore::simpleScore().