Apply limma-voom transformation and precision weighting — transform_voom • bulkMAE

Apply limma-voom transformation and precision weighting

Usage

transform_voom(
  x,
  experiment,
  formula,
  assay = "counts",
  normalize_method = "TMM",
  plot = FALSE,
  ...
)

Arguments

x: A MultiAssayExperiment object.
experiment: Optional experiment name.
formula: Fixed-effect model formula.
assay: Assay name or one-based assay index.
normalize_method: edgeR library normalization method.
plot: Whether voom should draw its diagnostic plot.
...: Additional arguments passed to limma::voom().

Value

A native limma EList.