Apply the DESeq2 variance-stabilizing transformation — transform_vst • bulkMAE

Apply the DESeq2 variance-stabilizing transformation

Usage

transform_vst(
  x,
  experiment,
  assay = "counts",
  blind = TRUE,
  design = ~1,
  fit_type = "parametric",
  ...
)

Arguments

x: A MultiAssayExperiment object.
experiment: Optional experiment name.
assay: Assay name or one-based assay index.
blind: Whether the transformation should ignore the design.
design: Design used when blind = FALSE.
fit_type: Dispersion fit type passed to DESeq2::vst().
...: Additional arguments passed to DESeq2::vst().

Value

A native DESeqTransform object.