Search a LINCS reference database for connected signatures — drug_lincs • bulkMAE

Search a LINCS reference database for connected signatures

Usage

drug_lincs(
  query,
  reference_database,
  workers = 1,
  sort_by = "NCS",
  tau = FALSE,
  annotations = TRUE,
  ...
)

Arguments

query: A list with upset and downset, usually from drug_query().
reference_database: Path or identifier accepted by signatureSearch::qSig().
workers: Number of workers.
sort_by: LINCS score used to rank results.
tau: Calculate the standardized Tau score.
annotations: Add compound annotations when available.
...: Additional arguments passed to signatureSearch::gess_lincs().

Value

A native gessResult object.