Plot selected assay features as a heatmap
Usage
plot_assay_heatmap(
x,
experiment,
assay,
features,
scale = c("row", "none"),
cluster_rows = TRUE,
cluster_columns = TRUE,
column_split = NULL,
feature_label = NULL
)Arguments
- x
A
MultiAssayExperiment.- experiment
Experiment name.
- assay
Assay name or index.
- features
Explicit feature identifiers to plot.
- scale
Standardize each feature row or retain assay values.
- cluster_rows, cluster_columns
Reorder features or samples by hierarchical clustering. Dendrograms are not drawn.
- column_split
Optional sample metadata column or complete sample-named vector used to split the x axis.
- feature_label
Optional feature metadata column or complete feature-named labels. Duplicate display labels are made unique.
Value
An unprinted standard ggplot object carrying recommended physical
dimensions for plot_save().