Plot one classic GSEA running-score profile

Displays the running enrichment score, gene-set hit positions with a rank heat band, and the ranked metric as three intrinsic parts of one standard ggplot. The parts share a rank-position axis and use fixed relative panel heights of 0.50, 0.20, and 0.30. This function does not call private enrichplot helpers or rerun GSEA.

Usage

plot_gsea_classic(
  result,
  term,
  ranks = NULL,
  gene_sets = NULL,
  exponent = NULL,
  term_label = NULL
)

Arguments

result

A native clusterProfiler gseaResult or a GSEA result table.

term

One explicit term identifier to display.

ranks

Optional decreasing, gene-named, finite numeric rank vector.

gene_sets

Optional uniquely named list mapping terms to genes.

exponent

Optional finite non-negative GSEA weighting exponent.

term_label

Optional single non-empty display label for term.

Value

An unprinted standard ggplot object carrying recommended physical dimensions for plot_save().

Details

A native clusterProfiler gseaResult supplies its ranked vector, gene sets, exponent, and leading-edge membership automatically. For an fgsea or generic GSEA table, ranks, gene_sets, and exponent are all required. Those inputs must reproduce the reported enrichment score.

See also

Other plotting: plot_assay_heatmap(), plot_de_ma(), plot_de_volcano(), plot_embedding(), plot_gsea_ridge(), plot_ora_bubble(), plot_ora_network(), plot_ora_radial(), plot_qc_correlation(), plot_qc_library(), plot_qc_outliers(), plot_save(), theme_bulkmae()